Installation

Using pip

You can install haptools from PyPI using pip.

Note

We recommend using pip >= 20.3.

pip install 'pip>=20.3'

pip install haptools

Using conda

We also support installing haptools from bioconda using conda.

conda install -c conda-forge -c bioconda haptools

Installing the latest, unreleased version

Can’t wait for us to tag and release our most recent updates? You can install haptools directly from the main branch of our Github repository using pip.

pip install --upgrade --force-reinstall git+https://github.com/cast-genomics/haptools.git

Development installation

If you would like to edit and work with the source code, please refer to these instructions for a different installation setup.